# vim: ts=50 nowrap noet textwidth=0
#
#  Title: Phylogeny of Fungi
#  Label: Fungi
#  Strict: 0
#
#  Notes: <p>I don't know anything about mushrooms.  The more I learn the
#  more I realize I'll never have a clue.  Fungi have been around way too
#  long, diverging, converging, re-diverging, re-converging, etc. until there
#  are no apparent visual clues to their relationships.  A single family can
#  include slime molds, lichens, puffballs, and true mushrooms.  Where do you
#  go from there?!  (Incidentally, why do so many mushrooms bother to make
#  themselves so brightly and attractively colored??  Does it really help
#  prevent them from being eaten?  Color seems pretty uncorrelated with
#  poisonousness to me.)
#
#  Notes: <p>The tree below is compiled from the very best info I could find
#  on the web and in my mushroom guidebooks.  If you try to derive any more
#  than a very broad impression from this information you are asking for
#  trouble.  Here are a few of the web resources I used:
#  <ul type=none><li>
#    <a href="http://www.tolweb.org">Tree of Life</a><br>
#    <a href="http://www.innvista.com/science/botany/mushroom">Innvista.com</a><br>
#    <a href="http://www.bioimages.org.uk">BioImages</a><br>
#    <a href="http://folk.uio.no/klaush/euasco.htm">some Norwegian site</a><br>
#    <a href="http://www.hiddenforest.co.nz/fungi/class">Forest Fungi of NZ</a> <small>(very beautiful and interesting site)</small><br>
#    <a href="http://www.biology.duke.edu/fungi/mycolab/publications/117clades.html">117 Clades of Euagarics</a><br>
#  </ul>
#
#  Notes: <p>Note: the lists of genera do not even attempt to be complete.
#  It's just that many traditional families are so polyphyletic as to be
#  nearly meaningless from a phylogenetic perspective, so in order to provide
#  any sort of idea what the various clades represent I have to enumerate a
#  broad sample of their genera.
#
#  Link: top   top.html?node=Fungi
#  Strict: 0
#
################################################################################

* Fungi
| Chytridiomycota
| Zygomycota
|.* Ascomycota
||| Archaeascomycetes
|||. Hemiascomycetes
||'' Euascomycetes
||* Basidiomycota
||| Urediniomycetes
|||.* Ustilaginomycetes
||||| Entorrhizomycetidae
|||||. Ustilaginomycetidae
||||'' Exobasidiomycetidae
||||* Hymenomycetes
|||||.. Homobasidiomycetes
||||||' Auriculariales
|||||' Dacrymycetales
|||||* Tremellomycetidae
|||||| Christianseniales
|||||| Cystofilobasidiales
|||||| Filobasidiales
|||||| Tremellales
'''''' Trichosporonales

* Euascomycetes
| Pezizales
|.. Erysiphales
||| Helotiales
||' Rhytismatales
||. Lecanorales
|||. Pleosporales
||||.... Diatrypales
|||||||| Melanosporales
|||||||' Xylari{ales,aceae}
||||||' Hypocreales
|||||' Clavicepit{ales,aceae}
|||||. Dothideales
||||||. Chaetothyriales
|||||||. Onygenales
||||||||. Elaphomycetales
|'''''''' Eurotiales
| Laboulbeni{ales,aceae}?
| Plectasc{ales,aceae}?
| Taphrin{ales,aceae}?
| Tuber{ales,aceae,}?
' Deuteromycetes?

* Homobasidiomycetes
| Cantharelloid_Clade
| Gomphoid-Phalloid_Clade
| Hymenochaetoid_Clade
|.. Euagarics_Clade
||' Bolete_Clade
|| Jaapia_Clade
||. Athelioid_Clade
||| Corticioid_Clade
||| Gloeophyllum_Clade
||| Polyporoid_Clade
||| Russuloid_Clade
||| Thelephoroid_Clade
|'' Trechisporoid_Clade
' (unplaced_Homobasidiomycetes)

#-------------------------------------------------------------------------------

* Clavicepitaceae
' Cordyceps

* Eurotiales
| Eurotiaceae
' Trichocomaceae

* Hypocreales
| Diatrypaceae
|* Hypocreaceae
|| Hypocrea
|' Hypomyces
| Nectriaceae
' Sphaeriaceae

* Lecanorales
| Acarosporaceae
| Alectoriaceae
| Bacidiaceae
| Candelariaceae
| Cladoniaceae
| Collemataceae
| Haematommataceae
| Lecanoraceae
| Lecideaceae
| Micareaceae
| Mycoblastaceae
| Ophioparmaceae
| Pannariaceae
| Parmeliaceae
| Physciaceae
| Porpidiaceae
| Psoraceae
| Ramalinaceae
| Rhizocarpaceae
| Stereocaulaceae
| Trapeliaceae
' Umbilicariaceae

* Helotiales
|* Dermatiaceae
|' Chlorociboria
| Geoglossaceae
|* Helotiaceae
|| Microglossum
|| Mitrula
|| Neolecta
|| Spathularia
|' Trichoglossum
|* Hyaloscyphaceae
|' Dasyscyphus
|* Leotaceae
|| Ascocoryne
|| Bisporella
|| Bulgaria
|| Cudonia
|| Encoelia
|' Leotia
| Orbiliaceae
|* Sclerotiniaceae
|' Monilinia
|* Vibrisseaceae
'' Vibrissea

* Pezizales
|* Ascobolaceae
|' Ascobolus
|* Helvellaceae
|| Discina
|| Gyromitra
|| Helvella
|| Rhizina
|' Underwoodia
| Humariaceae
|* Morchellaceae
|| Disciotis
|| Morchella
|' Verpa
| Otideaceae
|* Pezizaceae
|| Peziza
|' Sarcosphaera
|* Pyronemataceae
|| Aleuria
|| Anthracobia
|| Caloscypha
|| Geopora
|| Geopyxis
|| Humaria
|| Otidea
|| Scutellinia
|' Tarzetta
|* Sarcoscyphaceae
|| Sarcoscypha
|| Microstoma
|' Wynnea
|* Sarcosomataceae
|| Galiella
|| Neournula
|| Plectania
|| Pseudoplectania
|| Sarcosoma
'' Urnula

* Xylariaceae
| Daldinia
| Hypoxylon
| Ustulina
' Xylaria

#-------------------------------------------------------------------------------

* Athelioid_Clade
| Athelia
' Fibularhizoctonia

* Auriculariales
' Auricularia

* Bolete_Clade
| Astraeus
| Boletellus
| Boletinellus
| Boletus
| Calostoma
| Coniophora
| Hygrophoropsis
| Paxillus
| Phylloporus
| Pseudomerulius
| Rhizopogon
| Scleroderma
| Serpula
| Strobilomyces
| Suillus
| Tapinella
| Tremellogaster
' Tylopilus

* Cantharelloid_Clade
| Botryobasidium
| Cantharellus
| Ceratobasidium
| Clavulina
| Craterellus
| Hydnum
| Multiclavula
| Piriformospora
| Polyozellus?
| Sistotrema
| Thanatephorus
| Tulasnella
' Uthatobasidium

* Christianseniales
' Christiansenia

* Corticioid_Clade
| Beenakia
| Ceraceomyces
| Dendrocorticium
| Galzinia
| Gelatoporia
| Laeticorticium
| Laetisaria
| Panus
| Phanerochaete
| Phlebia
| Phlebiopsis
| Podoscypha
| Punctularia
' Vuillemina

* Dacrymycetales
| Calocera
| Dacrymyces
| Dacryopinax
' Guepiniopsis

* Euagarics_Clade
| Agrocybe
| Ampulloclitocybe
| Amyloflagellula
| Aphyllotus
| Arrhenia
| Auriculariopsis
| Baeospora
| Calathella
| Calyptella
| Camarophyllus
| Cantharellula
| Cantharocybe
| Catathelasma
| Cheimonophyllum
| Chondrostereum
| Clavaria
| Copelandia
| Cylindrobasidium
| Cyphella
| Cyphelloid
| Cyphellopsis
| Cyphellostereum
| Cystoderma
| Dendrocollybia
| Descolea
| Digitatispora
| Flagelloscypha
| Flammula
| Flammulaster
| Floccularia
| Gliophorus
| Gloeostereum
| Halocyphina
| Hemimycena
| Hemipholiota
| Hennigsomyces
| Henningsomyces
| Humidicutis
| Hydnangium
| Hymenogaster
| Incrustocalyptella
| Inocybe
| Kuehneromyces
| Laccaria
| Lachnella
| Leratiomyces
| Limnoperdon
| Macrocystidia
| Macrotyphula
| Maireina
| Melanoleuca
| Merismodes
| Mycaureola
| Mythricomyces
| Neohygrophorus
| Nia
| Omphaliaster
| Omphalina
| Pachylepyrium
| Panaeolus
| Pellidiscus
| Phaeogalera
| Phaeolepiota
| Phaeomarasmius
| Phaeonematoloma
| Phaeosolenia
| Phyllotopsis
| Pleurocybella
| Pleuroflammula
| Pleurotopsis
| Pluteus
| Pseudoarmillariella
| Pseudoclitocybe
| Pseudoomphalina
| Rectipilus
| Repetobasidium
| Resupinatus
| Rimbachia
| Ripartitella
| Ripartites
| Schizopora
| Stagnicola
| Stereopsis
| Stigmatolemma
| Stipitochaete
| Stromatoscypha
| Tricholomopsis
| Tubaria
| Tubulicrinis
| Typhula
| Weraroa
| Woldmaria
|* Agaricaceae
||. Agaricus
||| Gyrophragmium
||' Longula
||* Lycoperdales
||| Bovista
||| Calvatia
||' Lycoperdon
||. Leucoagaricus
||' Leucocoprinus
|| Battarrea
|| Chlorophyllum
|| Cystolepiota
|| Lepiota
|| Macrolepiota
|| Melanophyllum
|| Montagne
|| Podaxis
|' Tulostoma
|* Amanitaceae
|| Amanita
|| Catatrama
|| Limacella
|' Torrendia
|* Bolbitiaceae
|| Bolbitius
|| Conocybe
|| Gastrocybe
|' Pholiotina
|. Squamanita
|' Phaeocollybia
|* Callistosporioideae
|| Callistosporium
|| Macrocybe
|' Pleurocollybia
|* Collybia-Clitocybe_Group
|| Clitocybe
|| Collybia
|| Lepista
|' Plicaturopsis
|* Cortinarioideae
|| Cortinarius
|| Dermocybe
|| Rapacea
|| Rozites
|' Thaxterogaster
|* Crepidotoideae
|| Crepidotus
|' Simocybe
|* Entolomataceae
|| Alboleptonia
|| Claudopus
|| Entoloma
|| Inocephalus
|| Inopilus
|| Leptonia
|| Nolanea
|| Pouzarella
|' Trichopilus
|* Fayodioideae
|| Caulorhiza
|| Conchomyces
|| Gamundia
|| Fayodia
|' Myxomphalia
|* Fistulinaceae
|| Fistulina
|| Porodisculus
|| Schizophyllum
|' Volvariella
|* Gymnopiloideae
|| Galerina
|| Gymnopilus
|' Hebelomina
|* Hebelomatoideae
|| Naucoria
|' Hebeloma
|* Hydropoideae
|| Clitocybula
|| Gerronema
|| Hydropus
|| Megacollybia
|' Porotheleum
|* Hygrophoraceae
|| Chrysomphalina
|| Chromosera
|| Cuphophyllus
|| Hygrocybe
|' Hygrophorus
|* Lyophylleae
|| Asterophora
|| Calocybe
|| Hypsizygus
|| Lyophyllum
|| Ossicaulis
|| Termitomyces
|| Typhrocybe
|' Tricholomella
|* Marasmiaceae
|| Campanella
|| Chaetocalathus
|| Crinipellis
|| Marasmius
|' Tetrapyrgos
|* Mycenaceae
|| Cotobrusia
|| Dictyopanus
|| Favolaschia
|| Mycena
|| Mycenoporella
|| Panellus
|| Prunulus
|' Resinomycena
|* Nidulariaceae
|| Crucibulum
|| Cyathus
|' Nidula
|* Omphalotaceae
|| Anthracophyllum
|| Caripia
|| Gymnopus
|| Lampteromyces
|| Lentinula
|| Marasmiellus
|| Micromphale
|| Neonothoparus
|| Omphalotus
|| Rhodocollybia
|' Setulipes
|* Physalacriaceae
|| Armillaria
|| Cyptotrama
|| Flammulina
|| Gloiocephala
|| Oudemansiella
|| Physalacria
|| Rhizomarasmius
|| Rhodotus
|| Strobilurus
|' Xerula
|* Pleurotaceae
|| Hohenbuehelia
|| Nematoctonus
|' Pleurotus
|* Psathyrellaceae
|| Coprinellus
|| Coprinopsis
|| Coprinus
|| Lacrymaria
|| Parasola
|' Psathyrella
|* Psilocybaceae
|| Melanotus
|' Psilocybe
|* Rhodocyboideae
|| Clitopilus
|' Rhodocybe
|* Stropharioideae
|| Hypholoma
|| Magnivelaris
|| Naematoloma?
|| Pholiota
|| Semiglobata
|' Stropharia
|* Tricholomatoideae
|| Leucopaxillus
|| Porpoloma
|' Tricholoma
|* Xeromphalinoideae
|| Heimiomyces
'' Xeromphalina

* Gloeophyllum_Clade
| Gloeophyllum
| Heliocybe
| Neolentinus
' Veluticeps

* Gomphoid-Phalloid_Clade
| Aseroe
| Clathrus
| Clavariadelphus
| Gastrosporium
| Gautieria
| Geastrum
| Gloeocantharellus
| Gomphus
| Hysterangium
| Kavinia
| Lentaria
| Lysurus
| Phallus
| Protubera
| Pseudocolus
| Ramaria
| Ramaricium
' Sphaerobolus

* Hymenochaetoid_Clade
| Basidioradulum
| Cantharellopsis
| Coltricia
| Cotylidia
| Fibricium
| Fomitiporia
| Hydnochaete
| Hymenochaete
| Hyphoderma
| Hyphodontia
| Inonotus
| Oxyporus
| Phellinus
| Phylloporia
| Resinicium
| Rickenella
' Trichaptum

* Jaapia_Clade
' Jaapia

* Polyporoid_Clade	(highly polyphyletic)
| Abortiporus
| Aegerita
| Albatrellus
| Amylocystis
| Antrodia
| Antrodiella
| Aurantioporus
| Auriporia
| Bjerkandera
| Candelabrochaete
| Ceriporia
| Ceriporiopsis
| Climacocystis
| Climacodon
| Cryptoporus
| Dacryobolus
| Daedalea
| Diplomitoporus
| Fibroporia
| Fomitopsis
| Gloeoporus
| Grifola
| Hapalopilus
| Helicoon
| Humphreya
| Junghunia
| Laetiporus
| Leptoporus
| Lopharia
| Meripilus
| Neolentiporus
| Oligoporus
| Parmastomyces
| Perenniporia
| Phaeolus
| Piptoporus
| Postia
| Pulchericium
| Pycnoporellus
| Skeletocutis
| Sparassis
| Sparsitubus
| Spongipellis
| Steccherinum
| Taeniospora
| Tyromyces
| Wolfiporia
|* Polyporaceae
|| Amauroderma
|| Daedaleopsis
|| Datronia
|| Dentocorticium
|| Fomes
|| Ganoderma
|| Irpex
|| Lentinus
|| Lenzites
|| Polyporus
|| Pycnoporus
'' Trametes

* Russuloid_Clade
| Acanthobasidium
| Acanthofungus
| Acanthophysium
| Aleurodiscus
| Amphinema
| Amylostereum
| Asterostroma
| Auriscalpium
| Bondarzewia
| Clavicorona
| Coronicium
| Cymatoderma
| Dentipellis
| Dichostereum
| Echinodontium
| Gloeocystidiellum
| Hericium
| Heterobasidium
| Lactarius
| Laurilia
| Laxitextum
| Lentinellus
| Merulius
| Peniophora
| Polyporoletus
| Russula
| Scytinostroma
| Stereum
| Vararia
| Xenasma
| Xylobolus
' Zelleromyces

* Thelephoroid_Clade
| Bankera
| Boletopsis
| Hydnellum
| Phellodon
| Pseudotomentella
| Sarcodon
' Thelephora

* Trechisporoid_Clade
' Trechispora

* Tremellales
| Exidia
| Exidiopsis
| Phlogiotis
| Pseudohydnum
| Tremella
' Tremellodendron

* (unplaced_Homobasidiomycetes)
| Acetabula
| Alnicola
| Amanitopsis
| Anellaria
| Anthopeziza
| Anthrurus
| Apiocrea
| Arachnion
| Arcyria
| Armillariella
| Boletinus
| Brefeldia
| Calbovista
| Caloporus
| Calycella
| Cenangium
| Ceratiomyxaceae
| Cerrena
| Cheilymenia
| Chromocrea
| Chroogomphus
| Ciboria
| Clavulinopsis
| Coriolus
| Corticium
| Creopus
| Cribraria
| Crustoderma
| Cryptochaete
| Cyclomyces
| Cytidia
| Dendrothele
| Dentinum
| Diachea
| Dictydium
| Dictyophora
| Dissoderma
| Endoptychum
| Favolus
| Fuligo
| Fuscoboletinus
| Geoglossum
| Globifomes
| Gomphidius
| Gyrodon
| Haematostereum
| Heliomyces
| Heliotium
| Hemitrichia
| Hirschioporus
| Hydnoporia
| Hymenoscyphus
| Ischnoderma
| Laricifomes
| Laxitextum
| Leccinum
| Leocarpus
| Lepidella
| Leptopodia
| Limacella
| Lindteria
| Lycogala
| Macowanites
| Macroscyphus
| Metatrichia
| Mucronoporus
| Mutinus
| Mycenastrum
| Mycoacia
| Mycorrhaphium
| Myriostoma
| Nectria
| Nidularia
| Nyctalis
| Omphalia
| Onnia
| Osteina
| Oxydontia
| Pachyella
| Paxina
| Peckiella
| Peniophora
| Phaeohelotium
| Phaeomarasmius
| Phaeophlebia
| Phallogaster
| Phellorinia
| Physarum
| Piloderma
| Pisolithus
| Poria
| Poronidulus
| Porphyrellus
| Pseudocoprinus
| Psuedofistulina
| Pterula
| Ptychoverpa
| Pulveroboletus
| Pustularia
| Pyronema
| Ramariopsis
| Rhodophyllus
| Sclerotinia
| Simblum
| Spathulariopsis
| Spongiporus
| Spragueola
| Stemonitis
| Stephanospora
| Tramellodendron
| Trogia
| Truncocolumella
| Tubifera
' Vascellum